How does Codeforces deals with malicious code. Does it handle this on code level like blacklisting or at OS level?
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I don't know competitive programming platforms that try to isolate the code on the language level. That's quite hard, as there are many languages with numerous features and banning every potentially malicious construct is quite hard. In C/C++, you can even use raw system calls and assembly, which may help to overcome the limitations.
I am unsure what Codeforces does exactly, but here are some good examples for other online judging systems.